PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0174.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BES1
Protein Properties Length: 286aa    MW: 30988.5 Da    PI: 9.4434
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0174.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822206.29e-64121521145
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p          +++ p
  Bostr.6864s0174.2.p  12 AATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSQPI---------ETTPP 92 
                          5799************************************************************************.........8999* PP

               DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145
                          +ss+q+s++ssa++sp++sy+asp+sss+psp+++d+i+++ +     + l+p+l++l++
  Bostr.6864s0174.2.p  93 CSSIQLSPQSSAFQSPIPSYQASPSSSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 152
                          *************************************98764456666888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.1E-6114150IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTVSGGGGGS TAATGRMPTW KERENNKRRE RRRRAIAAKI FTGLRSQGNY KLPKHCDNNE  60
VLKALCLEAG WIVHEDGTTY RKGSQPIETT PPCSSIQLSP QSSAFQSPIP SYQASPSSSS  120
YPSPTRFDHI PNRFDPNQSS TYLIPYLQNL ASSGNLAPLR ISNSAPVTPP ISSPRGSTPR  180
LPRWQSSNFP VSAPSSPTRR LHHYTSIPEC DESDVSTVDS CRWGNFQPVN VSQTCPPSPT  240
FNLVLKTVNG GGGDLSVKPW EGEKIHDVGI DDLELTLGNS TKGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0174.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498620.0AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankBT0024520.0BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBankBT0063100.0BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882382.11e-163BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-155BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLD7LTI11e-162D7LTI1_ARALL; Uncharacterized protein
STRINGBostr.6864s0174.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-141BES1/BZR1 homolog 1