PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.6864s0194.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 127aa MW: 14597 Da PI: 8.7246

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.6864s0194.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.6	4.8e-34	20	108	1	89
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+lrr+C++dC++apy+ ++++++a vhk+ G+s+v +++++++++re+amssl +eA+ r++dPvyG++ +i +lq+ql+ Bostr.6864s0194.1.p 20 PCAVCKYLRRRCTRDCIFAPYLSTNKQENYALVHKVIGVSHVATMINEIHPSQREIAMSSLSWEAQTRLNDPVYGCTIIIDRLQRQLKV 108 7*************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.969	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-33	20	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
LTLYTNIQIL LYQMDKITPP CAVCKYLRRR CTRDCIFAPY LSTNKQENYA LVHKVIGVSH 60 VATMINEIHP SQREIAMSSL SWEAQTRLND PVYGCTIIID RLQRQLKVIN HFYIVHGNSL 120 DNNAIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-31	20	106	11	97	LOB family transfactor Ramosa2.1
5ly0_B	6e-31	20	106	11	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.6864s0194.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292643.2	1e-49	LOB domain-containing protein 28
Swissprot	Q9SCS4	3e-41	LBD28_ARATH; LOB domain-containing protein 28
TrEMBL	R0FSZ0	2e-49	R0FSZ0_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.6864s0194.1.p	3e-90	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	1e-43	LOB domain-containing protein 28

Link Out ? help Back to Top
Phytozome	Bostr.6864s0194.1.p