PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0187.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 420aa    MW: 48349.5 Da    PI: 5.1564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0187.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11369416348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           WT+eE e l ++vk++G+  Wk I +  +     R++ ++k++w+++l
  Bostr.7128s0187.1.p 369 FWTPEEVEALREGVKEYGKS-WKDIKNSNPvvlADRSEVDLKDKWRNLL 416
                          5*****************88.************9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.817362419IPR017930Myb domain
SuperFamilySSF466895.76E-13364416IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-12364417IPR009057Homeodomain-like
SMARTSM007174.4E-9366418IPR001005SANT/Myb domain
CDDcd116606.21E-16368416No hitNo description
PfamPF002491.9E-9370416IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEVMDKWVAE FFLRRQQNPR VYASPLLSAL KPVDSDDCVK LKITAVLQDI SNSLIRGTVD  60
EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAAECTLRF MWPVTASDGF FGYVLDKIWK  120
KRIGMLKERE SDLVTHELLK WESDLNKAFE EPEFYQKIRE TNIRYNAISH LTQLLKEQWA  180
LLGCSSLESE ARKRFLKRKD SPYASRKRGN DFARAGDTTD NVNEELEIGE RREGRNGSIR  240
ENANDVEEVG GVENPDGVDK VNEQEQEHEP SLNEGYITVA RELKDFLLEI QRLIDPSNRQ  300
EQEPDNAMDQ SLDITPQHDG ANRTEAEDSE GTSSSRRVRP HLPTPKPLNV TPLKTRRLEN  360
PRPRRPMKFW TPEEVEALRE GVKEYGKSWK DIKNSNPVVL ADRSEVDLKD KWRNLLGRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0187.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273900.0AK227390.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-05-K06.
GenBankAY5195360.0AY519536.1 Arabidopsis thaliana MYB transcription factor (At1g15720) mRNA, complete cds.
GenBankBT0030850.0BT003085.1 Arabidopsis thaliana At1g15720 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7H20.0AC034256.3 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497332.20.0PREDICTED: uncharacterized protein LOC104774417, partial
TrEMBLR0II970.0R0II97_9BRAS; Uncharacterized protein
STRINGBostr.7128s0187.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.10.0TRF-like 5