PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0269.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 136aa    MW: 15770.7 Da    PI: 4.2919
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0269.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19999198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                         f k++   +  +s+ l +p  f  e+     + ++t+ l d sgrsW+v++  ++++g+++lt GW++Fvk+n+L++g  + F +d +++f 
  Bostr.7128s0269.1.p  9 FMKAF--ISQKSSKSLAIPLGFN-EYfPD--PLPITVDLLDYSGRSWTVRM-KKRGGGKVFLTLGWENFVKDNNLEDGKYLNFIYDCDRTF- 93
                         66777..445556669******8.66243..499*****************.3555556*************************9987776. PP

                         .EEEEE- CS
                   B3 92 lvvkvfr 98
                          +v +f 
  Bostr.7128s0269.1.p 94 -YVIIFG 99
                         .888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-244103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-215103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.5657101IPR003340B3 DNA binding domain
PfamPF023624.1E-17998IPR003340B3 DNA binding domain
SMARTSM010191.4E-199101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MADTSEVRFM KAFISQKSSK SLAIPLGFNE YFPDPLPITV DLLDYSGRSW TVRMKKRGGG  60
KVFLTLGWEN FVKDNNLEDG KYLNFIYDCD RTFYVIIFGH DMCSEFREFP QVVVDVDDYE  120
TCEDEEEEQK ENKSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-6011033104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0269.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934601e-123AB493460.1 Arabidopsis thaliana At1g16640 mRNA for hypothetical protein, partial cds, clone: RAAt1g16640.
GenBankBT0125111e-123BT012511.1 Arabidopsis thaliana At1g16640 gene, complete cds.
GenBankBT0148111e-123BT014811.1 Arabidopsis thaliana At1g16640 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497982.16e-77PREDICTED: B3 domain-containing protein At1g16640-like
SwissprotQ9FX773e-68Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLD7KEH66e-68D7KEH6_ARALL; Transcriptional factor B3 family protein
STRINGBostr.7128s0269.1.p1e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]