PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0342.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24163.7 Da    PI: 9.6405
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0342.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.3e-215098149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k i+++s+rqvtfskRr g++KK  ELSvL++a++avi fs  g++y +
  Bostr.7128s0342.1.p 50 KEIKEESKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSRCGRIYRF 98
                         689*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-2342101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.20742102IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-2243119IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184464IPR002100Transcription factor, MADS-box
PfamPF003199.6E-215298IPR002100Transcription factor, MADS-box
CDDcd002661.02E-1956113No hitNo description
PRINTSPR004041.4E-186479IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-1879100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEEDRETSSM TCLTPKDQLQ NPNVSVSKPK KETTTQTPKT TRGRQKIEIK EIKEESKRQV  60
TFSKRRRGLF KKSAELSVLT GAKIAVITFS RCGRIYRFGH VDALIDKYLR KSPVKLEAYS  120
GDNVAEEEGR RPWWERPVES VPEEELEDYV AALTVLRENL GKKIIAMSND RTVEIVPAWP  180
INMMGWKQTM DMQSLENLTD GITRCRVGQN G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0342.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934620.0AB493462.1 Arabidopsis thaliana At1g17310 mRNA for hypothetical protein, partial cds, clone: RAAt1g17310.
GenBankAY1412400.0AY141240.1 Arabidopsis thaliana MADS-box protein AGL100 mRNA, complete cds.
GenBankBT0252840.0BT025284.1 Arabidopsis thaliana At1g17310 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462580.0DQ446258.1 Arabidopsis thaliana clone pENTR221-At1g17310 MADS-box protein (At1g17310) mRNA, complete cds.
GenBankDQ6528410.0DQ652841.1 Arabidopsis thaliana clone 0000016569_0000011566 unknown mRNA.
GenBankT13M220.0AC026479.2 Sequence of BAC T13M22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892945.11e-122agamous-like MADS-box protein AGL61
TrEMBLD7KFE11e-121D7KFE1_ARALL; MADS-box protein
STRINGBostr.7128s0342.1.p1e-155(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.17e-96M-type_MADS family protein