PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7128s0505.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB_related

Protein Properties

Length: 291aa MW: 31593.2 Da PI: 6.5345

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7128s0505.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	106	150	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky Bostr.7128s0505.1.p 106 PWTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 150 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.658	99	155	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-16	101	155	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-17	102	153	IPR006447	Myb domain, plants
SMART	SM00717	1.0E-5	103	153	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-9	106	150	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	106	150	IPR009057	Homeodomain-like
CDD	cd00167	1.94E-6	106	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MAAVSSSSET GGGGAVGKRD EIMLFGVRVV VDPMRKCVSL NNLSDYEKSS PEDAIPKIVV 60 AGAGDGEDKN EADAAVLVAD GYASANDAVQ ISSSSGGNRE RKRGIPWTEN EHKRFLIGLQ 120 KVGKGDWKGI SRNFVKSRTP TQVASHAQKY FLRRTNLNRR RRRSSLFDIT TETVTEMLME 180 QDQAQENSPL PETNISSGHQ VMQVFPEVAV PTKTETSPQT FNLNDSYLVP VTFQANPAFN 240 LNTDAAPFSL NLSLASSFNL NEQPNSRHSA FTMMPSFSDG DSNSSIIRVA *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7128s0505.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316815	0.0	AK316815.1 Arabidopsis thaliana AT1G19000 mRNA, complete cds, clone: RAFL08-11-F04.
GenBank	AY045881	0.0	AY045881.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds.
GenBank	AY079415	0.0	AY079415.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds.
GenBank	AY088105	0.0	AY088105.1 Arabidopsis thaliana clone 41381 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_173334.1	1e-176	Homeodomain-like superfamily protein
Refseq	NP_849689.1	1e-176	Homeodomain-like superfamily protein
Swissprot	Q2V9B0	5e-59	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A178W7J9	1e-175	A0A178W7J9_ARATH; Uncharacterized protein
TrEMBL	Q9LMC7	1e-175	Q9LMC7_ARATH; AT1G19000 protein
STRING	Bostr.7128s0505.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-164	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Bostr.7128s0505.1.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]