PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0689.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 1043aa    MW: 115499 Da    PI: 8.0116
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0689.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40132209178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +l+qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  Bostr.7128s0689.1.p 132 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKLMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 209
                          6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-34125194IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.214130207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-37131209IPR004333Transcription factor, SBP-box
PfamPF031101.1E-28133206IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.98E-9794944IPR020683Ankyrin repeat-containing domain
CDDcd002043.76E-9794937No hitNo description
Gene3DG3DSA:1.25.40.201.9E-7833940IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.596837950IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    Send to blast
MDEVGAQVAT PMFIHPSLYP MGRKRDLYYP MSNRLVPSQP QPQPQRRDEW NSKMWDWDSR  60
RFEAKPVDAQ TLRLGNETQQ FDLTSRNRSG EERGLDLNLG SGLTAVEDTT TTQNIRPNKK  120
VRSGSPGGNY PMCQVDNCTE DLSHAKDYHR RHKVCEVHSK ATKALVGKLM QRFCQQCSRF  180
HLLSEFDEGK RSCRRRLAGH NRRRRKTTQQ EEIASGVVVP GNRDNTSNAN MDLMALLTAL  240
ACAQGRNEVK PASSPAVPDR EQLLQILDKI NALPLPMDLV SKLNNIGSLA RKNLDQPKAN  300
PPNDMNGASP STMDLLAVLS STLGSSSPDA LAILSQGGFG NKDSDKTKLS SYDHGVTTNV  360
EKRTFGFSSG GGERSSSSNQ SPSQDSDSRA QDTRSSLSLQ LFTSSPEDES RPTVASSRKY  420
YSSASSNPVE DRSPSSSPVM QELFPLQTSP ETMRSKNHNN SSPRTGCLPL ELFGASNRGT  480
ANPNFKGFGQ QSGYASSGSD YSPPSLNSDA QDRTGKIVFK LLDKDPSQLP GTLRSEIYNW  540
LSNIPSEMES YIRPGCVVLS VYIAMSPAAW EQLEQNLLQR LGVLLQNSQS DFWRNARFIV  600
NTGRQLASHK NGRVRCSKSW RTWNSPELIS VSPVAVVAGE ETSLIVRGRS LTNDGISIRC  660
THMGSYMSME VTGAACRQAV FDELNVNSFK VQNAQPGFLG RCFIEVENGF RGDSFPLIIA  720
NASICKELNR LEEEFHRKSE DTTEEQAQSS DCRPTSREEV VCFLNELGWL FQKNQTSELR  780
EQPDFSLARF KFLLVCSVER DYCALIRTLL DMLVERNLVN DELNAEALDM LAEIQLLNRA  840
VKRKSTKMVE QLIHYSVNPS ALDSSNNFVF LPNITGPGGI TPLHLAACTS GSDDMVDLLT  900
NDPQEIGLSN WNSLCDATGK TPYSYAAMRN NHSYNSLVAR KLADKRNKQV SLNIENEVVD  960
QNGLSKRLSS EMNKSSCASC ATVALKYQRR VSGSHRLFPT PIIHSMLAVA TVCVCVCVFM  1020
HAFPIVRQGS HFSWGGLDYG SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32123206384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0689.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269070.0AK226907.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 14, clone: RAFL09-16-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303847.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLR0IEQ30.0R0IEQ3_9BRAS; Uncharacterized protein
STRINGBostr.7128s0689.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]