PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0024.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 362aa    MW: 42251.8 Da    PI: 7.4425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.3e-17156202148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+ Ed +l + v+ +G++ W+ Ia+++  gRt+kqc++rw+++l
  Bostr.7200s0024.1.p 156 KGKWTESEDIKLEENVEFYGPKKWAMIAKKLK-GRTGKQCRERWHNHL 202
                          79*****************************9.*************97 PP
2Myb_DNA-binding45.51.8e-14216255647
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +eEd++l++++k +G++ W++Ia+ ++ gRt +++k++w++ 
  Bostr.7200s0024.1.p 216 EEEDQILIEVHKVFGTK-WTKIAQQLP-GRTYNSIKNHWNTT 255
                          7****************.*********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.594151206IPR017930Myb domain
SuperFamilySSF466891.46E-28154252IPR009057Homeodomain-like
SMARTSM007176.8E-15155204IPR001005SANT/Myb domain
PfamPF002491.0E-15156202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-21157211IPR009057Homeodomain-like
CDDcd001671.24E-14158202No hitNo description
PROSITE profilePS5129419.382209260IPR017930Myb domain
PfamPF002496.7E-13216255IPR001005SANT/Myb domain
SMARTSM007173.9E-9216258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-17216255IPR009057Homeodomain-like
CDDcd001675.11E-10216256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
IIHVVHSKSS GLQLSAYEIP LDYPFGSIET YSNTDNFEVS MNSITNNNKI YMIYIITQSL  60
QNPKGIFDNF RDLQEHTLWD ETIHNKELTK RVYEPALDQM MGEPLSFNVP VPKGIKNITR  120
EIMNQHEDQK MIKTYQKKNK KVVRTSKHSK KDDIIKGKWT ESEDIKLEEN VEFYGPKKWA  180
MIAKKLKGRT GKQCRERWHN HLCPGIKFQK FIIKCEEEDQ ILIEVHKVFG TKWTKIAQQL  240
PGRTYNSIKN HWNTTKRRVQ KQISENANPT DNNILENYIR YVTINNDDLS KTTETDGETT  300
NTEDDDGYKH MSFEEMNLSM DAHTQINEPV VDASTTSPYV PMPETEKTLN HDLNFDRMRK  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-361532584106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0024.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868650.21e-121transcription factor MYB115 isoform X1
RefseqXP_006285855.21e-121transcription factor MYB115
TrEMBLA0A178UAQ01e-124A0A178UAQ0_ARATH; MYB22
STRINGBostr.7200s0024.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.12e-88myb domain protein 22