PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0031.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 116aa    MW: 12984.8 Da    PI: 11.364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS636e-20178120201
                 GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                          +qGlQW+aL++ Las p++  s+RiTg+gs    s+e l +tg+rLa+f ++l+++fef+++  k  + +e+++L +++gE+
  Bostr.7200s0031.1.p   1 MQGLQWAALFHILASHPRKLRSIRITGFGS----SSELLASTGRRLADFSSALNLSFEFHPVEGKIRNLIEPSQLGTRQGEV 78 
                          69****************************....99*************************877777778*********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.1171115IPR005202Transcription factor GRAS
PfamPF035142.0E-17178IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MQGLQWAALF HILASHPRKL RSIRITGFGS SSELLASTGR RLADFSSALN LSFEFHPVEG  60
KIRNLIEPSQ LGTRQGEVRG HARTFVSYRQ TKCNSFVSYR HLSHHFSVVD FLVSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-17178138214Protein SCARECROW
5b3h_A2e-17178137213Protein SCARECROW
5b3h_D2e-17178137213Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170673e-81AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBankBT0297603e-81BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBankCP0026883e-81CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441372.15e-41PREDICTED: scarecrow-like protein 23
RefseqXP_010448131.14e-41PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-39SCL23_ARATH; Scarecrow-like protein 23
TrEMBLC0JEQ02e-41C0JEQ0_9BRAS; At5g41920-like protein (Fragment)
TrEMBLC0JER32e-41C0JER3_9BRAS; At5g41920-like protein (Fragment)
TrEMBLC0JER72e-41C0JER7_9BRAS; At5g41920-like protein (Fragment)
STRINGBostr.7200s0031.1.p9e-79(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.15e-42GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]