PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0121.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 265aa    MW: 29591 Da    PI: 8.9229
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.54.1e-3367220389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssase 72 
                          +kk++++++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlqqa+p+i+ +tg+                    +      
  Bostr.7200s0121.1.p  67 KKKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQQAEPSIISATGNgikpigtttesvvsqppltaD------ 150
                          69*************************************************************777775544444333222220...... PP

                  TCP  73 ceaesssssasnsssg............................................................k 89 
                                  ++s++++g                                                            +
  Bostr.7200s0121.1.p 151 -------FMVSHNKEGgasssqmaanglwtnetgqnttggfdlnygigflefdfkvvsemgfgnnqtpgpelglsqD 220
                          .......2222222222222222233333333334444455555555555555555555555555555555555551 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-2772252IPR005333Transcription factor, TCP
PROSITE profilePS5136925.56172126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MYPKKNPNLP SFLNPYPSPH NQDNDKKRKQ TEVKGFDILV GDKELKRKRK KKEKEEEEQQ  60
IQLLGEKKKK PNKDRHLKVE GRGRRVRLPP LCAARIYQLT KELGHKSDGE TLEWLLQQAE  120
PSIISATGNG IKPIGTTTES VVSQPPLTAD FMVSHNKEGG ASSSQMAANG LWTNETGQNT  180
TGGFDLNYGI GFLEFDFKVV SEMGFGNNQT PGPELGLSQD GNVGVVNPQV YQQMGQEQSR  240
VLHHQHHHHH SHEDQQQSTE KNGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14148DKELKRKR
24451LKRKRKKK
34551KRKRKKK
44650RKRKK
54652RKRKKKE
64853RKKKEK
74969KKKEKEEEEQQIQLLGEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0121.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870658.21e-128transcription factor TCP6
SwissprotQ9FLM61e-119TCP6_ARATH; Transcription factor TCP6
TrEMBLD7MIZ91e-127D7MIZ9_ARALL; Uncharacterized protein
STRINGBostr.7200s0121.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.11e-106TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]