PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0128.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 215aa    MW: 24876.7 Da    PI: 4.2475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.38.8e-2181411127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk. 88 
                          lp G+rF+P+d e+  ++L+ k+ g+++++ +v +e+ di++ +P+dLp   +++e++wyf++ + k++ t   +n       W  tg+ 
  Bostr.7200s0128.1.p   8 LPIGMRFRPSDLEIAAYFLTYKALGRHMKARTVPEEChDIFSRHPRDLPD--YGREEHWYFYCLKPKNQVT---TNS---YNLWIPTGEe 89 
                          699***************************88888889***********3..35789*******9987654...333...246*****93 PP

                  NAM  89 dkevlsk..kgelvglkktLvfy.........k..grapkgektdWvmheyr 127
                          ++evl+   +gelvg+k++++f          +   +++++ k +W+++e +
  Bostr.7200s0128.1.p  90 TEEVLDPkkNGELVGIKRSFAFIeneeeesdnNglSDEEEPPKYNWFLDEIS 141
                          4566665778899**********54444333313245555568888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-276159IPR003441NAC domain
PROSITE profilePS5100527.5368159IPR003441NAC domain
PfamPF023657.3E-109141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGPTYRDLPI GMRFRPSDLE IAAYFLTYKA LGRHMKARTV PEECHDIFSR HPRDLPDYGR  60
EEHWYFYCLK PKNQVTTNSY NLWIPTGEET EEVLDPKKNG ELVGIKRSFA FIENEEEESD  120
NNGLSDEEEP PKYNWFLDEI SLPLTVVDTD WTLCHIFCKK IKPEFVNLHI IDSESESEEE  180
EEDESVDKPL AETLDLVREK DESTVLPPPP PASP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0128.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198925.13e-97NAC domain containing protein 95
TrEMBLQ9FLM06e-96Q9FLM0_ARATH; At5g41090
STRINGBostr.7200s0128.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.13e-96NAC domain containing protein 95