PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0155.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 609aa    MW: 69222 Da    PI: 7.1197
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0155.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-094044411954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Bostr.7200s0155.1.p 404 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 441
                          554459******************************88 PP
2BELL107.11.1e-34262333172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e++elqk+kakLls+lee+++rY +y+eq+++ ++sFea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  Bostr.7200s0155.1.p 262 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAASFEAAVGVGAAELYTALASRAMSRHFRCLKDGLVGQI 333
                          679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.1E-43188329IPR006563POX domain
SMARTSM005743.8E-68194331IPR006563POX domain
PROSITE profilePS5007112.017382445IPR001356Homeobox domain
CDDcd000862.67E-10385446No hitNo description
SMARTSM003895.6E-9385449IPR001356Homeobox domain
SuperFamilySSF466893.08E-17386453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-28388452IPR009057Homeodomain-like
PfamPF059208.0E-18402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MARDQFYGRN HHHQEQQHQM INQIQGFDET NQNPTDHHHY NHQIFGSNSN MGMMIDFSKQ  60
QQIRMTSGLD HHHHHDQTTG GTDQNQLLED SSSTMRLCNV NNDFPSVVND ERPPQRPSQG  120
LSLSLSSSNP TSISLQSFEL RTQQQQQGYS GKSTHHQNLQ HSQMMMMMMN NHHQNNNHQH  180
HNHHQFQIGS SKYLSPAQEL LSEFCSLGVK ESDEEVMLMK HKRKQKGKQQ EEWDTSHNNN  240
DQHDQSATTS SKKHVPPLHS LEFMELQKRK AKLLSMLEEL KRRYGHYREQ MRVAAASFEA  300
AVGVGAAELY TALASRAMSR HFRCLKDGLV GQIQATSQAL GEREEDNRAV SIAARGETPR  360
LRLLDQALRQ QKSYRQMTLV DAHPWRPQRG LPERAVTTLR AWLFEHFLHP YPSDVDKHIL  420
ARQTGLSRSQ VSNWFINARV RLWKPMIEEM YCEETRGEQM EITNPMMIDT KPDPNQIIRV  480
EPESLSSIVT NPTSKTGQKH NSNQQGTTSF GSTFDFSLYG NQAVTYAGEG GPRGDVSLTL  540
GLQRNDGNGG VSLALSPVTA QGGQLYYGGR DHIEEGPVQY SASMLDDDQV QNLPYRNLMG  600
AQLLHDIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15391449563Homeobox protein Meis2
3k2a_B3e-15391449563Homeobox protein Meis2
4xrm_A4e-15391449563Homeobox protein Meis2
4xrm_B4e-15391449563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0155.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU399440.0U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds.
GenBankAY0492370.0AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441306.10.0PREDICTED: homeobox protein BEL1 homolog isoform X2
RefseqXP_019088821.10.0PREDICTED: homeobox protein BEL1 homolog isoform X1
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLD7MIV50.0D7MIV5_ARALL; Uncharacterized protein
STRINGBostr.7200s0155.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]