PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7305s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 231aa    MW: 26898.5 Da    PI: 9.8999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7305s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-163481148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W +eEd +l+ +v+ +G g+W+ I+r+ g++R +k+c++rw +yl
  Bostr.7305s0011.1.p 34 RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 81
                         788*****************************99************97 PP
2Myb_DNA-binding50.35.6e-1687132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E++l+++ +k+lG++ W++I+ +++ gRt++++k++w+++l
  Bostr.7305s0011.1.p  87 RGSMSPQEQDLIIRMHKLLGNR-WSLISGRLP-GRTDNEVKNYWNTHL 132
                          899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3922981IPR017930Myb domain
SMARTSM007172.9E-143383IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-2833128IPR009057Homeodomain-like
PfamPF002492.0E-143481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-223588IPR009057Homeodomain-like
CDDcd001672.88E-103781No hitNo description
PROSITE profilePS5129425.19382136IPR017930Myb domain
SMARTSM007171.2E-1586134IPR001005SANT/Myb domain
PfamPF002491.4E-1487132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2389135IPR009057Homeodomain-like
CDDcd001671.86E-1089132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRILLISSFT CKLWRQRENK NMEHEREGKS YVKRGLWKPE EDMILKSYVE THGEGNWADI  60
SRRSGLKRGG KSCRLRWKNY LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LISGRLPGRT  120
DNEVKNYWNT HLNKKSNSRK QNAPESIGRA TTFTDKPVMS TEVRRSHGEE GEGEENSIVR  180
NTWMEETNSF DYDVRIGSPL PLISHYPDNT LVFDPCFALT DLFPLLQDFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-233413527127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7305s0011.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196370.0AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282345.21e-142transcription factor MYB82
SwissprotQ9LTF71e-129MYB82_ARATH; Transcription factor MYB82
TrEMBLR0GVN81e-139R0GVN8_9BRAS; Uncharacterized protein
STRINGBostr.7305s0011.1.p1e-171(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-128myb domain protein 82