PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7365s0004.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 332aa    MW: 38185.3 Da    PI: 8.9075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7365s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.53.1e-2936120183
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+kvltpsdv+k++rlv+pk++ae++     ++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F+
  Bostr.7365s0004.1.p  36 FDKVLTPSDVGKLNRLVIPKQHAENYfplH-DNQNGTVLDFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFH 120
                          89*********************999**63.4457789***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-3931148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2934121IPR015300DNA-binding pseudobarrel domain
CDDcd100179.69E-2734121No hitNo description
SMARTSM010191.1E-2236140IPR003340B3 DNA binding domain
PfamPF023624.8E-2636121IPR003340B3 DNA binding domain
PROSITE profilePS5086314.07136144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNMSTTNSDQ ELTEIGASGS GNNNYFYTSE MREHMFDKVL TPSDVGKLNR LVIPKQHAEN  60
YFPLHDNQNG TVLDFQDRNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LFAGDTVSFH  120
RGYIPDDNAP ERRRKFFFID WRHRAEINLV HNINQHNFIF GSPTYPTTSF YPATEYSMPS  180
YRSFPPFYHN QYQEREYLGY GYGRIVNGGR YYTGSPLDHH HWWNLGRSEP LVYDSVPVFP  240
AARVPPSAPP QPSTTRKLRL FGVDMEESSS SGETRGEMGV AGHSSSSPVV IRDDGQSSWR  300
SPRGEMGASS SSVMQLSNDE EYKRKGKSLE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-47321474116B3 domain-containing transcription factor NGA1
5os9_B1e-47321474116B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERRRKF
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7365s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614920.0AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF11O40.0AF096370.1 Arabidopsis thaliana BAC F11O4.
GenBankFJ8737340.0FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874976.20.0B3 domain-containing transcription factor NGA4
SwissprotO825950.0NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLD7M4V00.0D7M4V0_ARALL; Uncharacterized protein
STRINGBostr.7365s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.10.0B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]