PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7365s0026.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 419aa    MW: 47683.5 Da    PI: 6.7077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7365s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13245290454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YIk+L
  Bostr.7365s0026.1.p 245 SHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIKNL 290
                          799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-3034187IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.123241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.22E-14244294No hitNo description
SuperFamilySSF474593.53E-18244309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-18245309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDDNLTFSPF LSSSILSITQ QTPAIVSSSP TDLLQQKLRF IVETSPDQWD YVIFWQKMID  60
DQSDRSYLAW VDGHFSGNKN NKSQENHTTK SIECEMMMDG GDLELFYATS FYGGDWSRRK  120
EFSDEFLVWL TGHDELRFSN YERAKEASFH GVHTFVSAPI HNGIIELGSS DSIKQNWNFI  180
NRVKSIFGSG KTPELTNQIG SYPKPAVSDH SEIENQQFTS AKKRRKLETT DGATAKENHH  240
SPVLSHVEAE RQRREKLNHR FYALRAVVPN VSRMDKASLL SDAVSYIKNL KSKIDDLETE  300
IKRLKTTMTD TYKLDYNSSN TCPSSVDQVN QRPSESNLKV QVKIVGNEAV VMVQTENVNH  360
PTCALMNTLM EMDCRVQHAY ASRFGQIMVQ DVFVLVPDGL RSEDRLRTTL VRNLRSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-21244310773Transcription factor MYC2
5gnj_B2e-21244310773Transcription factor MYC2
5gnj_E2e-21244310773Transcription factor MYC2
5gnj_F2e-21244310773Transcription factor MYC2
5gnj_G2e-21244310773Transcription factor MYC2
5gnj_I2e-21244310773Transcription factor MYC2
5gnj_M2e-21244310773Transcription factor MYC2
5gnj_N2e-21244310773Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7365s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198120.0AJ519812.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428091.10.0PREDICTED: transcription factor bHLH14-like
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV070.0R0GV07_9BRAS; Uncharacterized protein
STRINGBostr.7365s0026.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]