PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7365s0053.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CPP
Protein Properties Length: 151aa    MW: 16119.5 Da    PI: 4.4436
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7365s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.6e-161857140
                  TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                         ++k+gCnCkks+Cl kYCeC++ag+ Cs +C Ce+CkN+ 
  Bostr.7365s0053.1.p 18 RHKRGCNCKKSNCLMKYCECYQAGVGCSINCICEGCKNEF 57
                         589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.568158IPR005172CRC domain
SMARTSM011143.5E-161859IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-122056IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVSSEDEDDA SETPASARHK RGCNCKKSNC LMKYCECYQA GVGCSINCIC EGCKNEFGRK  60
EAMVKEVSVS EMMEKASAMV DDAKGIAEKA EKMVAEIETM VEKVAAMATK AGETAAKAAE  120
MVQEAEATME TAKANMAEAF AVMNTVVWDV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7365s0053.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289459.16e-33pre-mRNA-splicing factor CWC24
TrEMBLR0FIX61e-31R0FIX6_9BRAS; Uncharacterized protein
STRINGBostr.7365s0053.1.p1e-101(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1534122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-29Tesmin/TSO1-like CXC domain-containing protein