PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0055.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 177aa    MW: 19231.7 Da    PI: 6.4995
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.26e-2951041100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +Ca+Ck+l+++Ca++C  ap+fp+++  +f+ vh++FGa+nv ++l++l + e+re+a++sl+y Aear rd ++G++g+il++++ l++
  Bostr.7867s0055.1.p   5 RCAVCKILKETCAPGCKTAPHFPSHD-TRFEDVHQIFGAANVREILNNLgSVEQREIAAKSLCYAAEARRRDSISGCHGMILHYESILNN 93 
                          6**********************998.89********************78889************************************ PP

               DUF260  90 lkaelallkee 100
                          ++++++++ +e
  Bostr.7867s0055.1.p  94 VEQDIKSAVNE 104
                          ***99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5444105IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-285100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASNRCAVCK ILKETCAPGC KTAPHFPSHD TRFEDVHQIF GAANVREILN NLGSVEQREI  60
AAKSLCYAAE ARRRDSISGC HGMILHYESI LNNVEQDIKS AVNELETHVG PDQVPNLFDL  120
PIPDDFLTTK ASLDNYIEKI KSLNTVEKNQ KMGDCHGADG ASTSAGPSTA LARKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2121058111LOB family transfactor Ramosa2.1
5ly0_B2e-2121058111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282797.13e-91LOB domain-containing protein 32
SwissprotO496511e-73LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP67e-90R0GTP6_9BRAS; Uncharacterized protein
STRINGBostr.7867s0055.1.p1e-130(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.15e-76LOB domain-containing protein 32