PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0231.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 347aa    MW: 37842.7 Da    PI: 10.279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0231.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30276334259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Bostr.7867s0231.1.p 276 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 334
                          69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.5E-16240273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32263334IPR003657WRKY domain
PROSITE profilePS5081129.872270336IPR003657WRKY domain
SuperFamilySSF1182901.31E-25273334IPR003657WRKY domain
SMARTSM007745.9E-37275335IPR003657WRKY domain
PfamPF031065.6E-26277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAVDLMMSSS YGGGKGDGFP VIAAAAKMED TALREAASAG IHGVEEFLKL IGQSQPTEKI  60
QTEITAVTDV AVNSFKKVIS LLGRSRIGHA RFRRAPTTTQ TPFKQTVVEE EAEEKKPETT  120
TVFTKQKTEQ YHGGGSAFRV YCPTPIHRRP PLSHNNNNNQ NQTKNGSSSS SPPIVTNGTP  180
STINFAPSPP VSATNSFMSS HRCETDSTHM SSGFEFTNPS QVSGSRAKPP LSSASLKRRC  240
NSSPSSRCHC SKKRKSRVKR VIRVPAVSSK MADIPSDEFS WRKYGQKPIK GSPHPRGYYK  300
CSSVRGCPAR KHVERALDDA MMLIVTYEGD HNHALVLETT HHDKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21263335273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236254KRRCNSSPSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0231.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0845830.0AY084583.1 Arabidopsis thaliana clone 112528 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869730.10.0probable WRKY transcription factor 7
SwissprotQ9STX00.0WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLD7M8W30.0D7M8W3_ARALL; WRKY DNA-binding protein 7
STRINGBostr.7867s0231.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-178WRKY DNA-binding protein 7