PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0349.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 183aa    MW: 20919.2 Da    PI: 9.26
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0349.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-132877455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          h+e+E++RR+++ s ++ L +llP  +   ++K s ++ +  Av+YI +Lq
  Bostr.7867s0349.1.p 28 VHKEVEKQRRQEMASLYASLHSLLPLEF--IQGKRSTSDQVNGAVNYIEYLQ 77
                         6*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-122390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0742476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.68E-82681No hitNo description
Gene3DG3DSA:4.10.280.109.4E-112791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-102877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00143082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNDLLEKIRR RPCKKLRVSS EENMEKIVHK EVEKQRRQEM ASLYASLHSL LPLEFIQGKR  60
STSDQVNGAV NYIEYLQRNI KDMSSKRDDL MLLSRRSFGS SNEQGWNEIS NHVVIRPCLV  120
GVEIVFSVLQ TPFSSVLQVL REHSLCVLGC ISSNVNDLAL IDLANLKDTL TLMKQLNDFK  180
KK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0349.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936991e-134AB493699.1 Arabidopsis thaliana At4g25400 mRNA for hypothetical protein, partial cds, clone: RAAt4g25400.
GenBankAY1426211e-134AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448440.14e-99PREDICTED: transcription factor bHLH118
SwissprotQ9STJ74e-87BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A1J3IUJ11e-91A0A1J3IUJ1_NOCCA; Uncharacterized protein
STRINGBostr.7867s0349.1.p1e-130(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-89bHLH family protein