PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0350.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 227aa    MW: 25022.2 Da    PI: 7.166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-094594253
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                         +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  Bostr.7867s0350.1.p 45 KLLHRDIERQRRQEMATLFAALRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 94
                         6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1240113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6174395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-74594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-845113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-74894No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPYQNLNPK GYQRQITFSS AGEGGSSGGS GIPHETDDNK KKKKKLLHRD IERQRRQEMA  60
TLFAALRTHL PLQYIKGKRA VSDHVNGAVN FIKDTETRIK ELSARRDELS RETGQRYESN  120
PDPAKTGSDL PKSDPATVMV QPHVSGLEVV VSSNSSGPEA LLLSRVLEAL QEKGLEVISS  180
LTTRVNERLM HTIQVEVNSF GCIDLAWVQE KLVEDLILST GNSSET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0350.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937000.0AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438887.11e-142PREDICTED: transcription factor bHLH126 isoform X1
SwissprotQ9STJ61e-125BH126_ARATH; Transcription factor bHLH126
TrEMBLR0F8H91e-124R0F8H9_9BRAS; Uncharacterized protein
STRINGBostr.7867s0350.1.p1e-167(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-127bHLH family protein