PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0437.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HRT-like
Protein Properties Length: 416aa    MW: 46331.6 Da    PI: 9.432
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0437.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like58.51.1e-18212241130
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                          +CGv+ledGs+C+++P+kgRKRC eHKG+R
  Bostr.7867s0437.1.p 212 VCGVLLEDGSTCTTTPIKGRKRCTEHKGKR 241
                          7****************************9 PP
2HRT-like504.8e-16267297131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGvil d  +C+r+Pv  RKRCe HKGmR+
  Bostr.7867s0437.1.p 267 ICGVILPDMVPCRRTPVSRRKRCEDHKGMRV 297
                          8*****************************7 PP
3HRT-like31.53.1e-10337364229
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 
                          C +++++G +C+r++ kg KRC++HK++
  Bostr.7867s0437.1.p 337 CEATTKNGLPCSRSAPKGSKRCWQHKDK 364
                          9*************************86 PP
4HRT-like59.84.2e-19383413131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCG++l +GsvC + PvkgRKRCeeHKGmRi
  Bostr.7867s0437.1.p 383 ICGIKLYNGSVCGKAPVKGRKRCEEHKGMRI 413
                          8*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MFKKDDYIRT NHDAVFSKWQ GFARSMLLRK PISETAELRK TFADYSLISR DLGPKILIGA  60
NDKENFRKGK DCVGRVKGAF PGLYELGVAV IGHDQGRKDD KDDVLVANLG QAESIRYRLR  120
SYGRSIAHHD LLKKLGVSEF MSPRKSGLSQ KKTGNKTEEN KHDSAEEREI SSDAAEKESN  180
LLPSILRFGR SRPQPVSDTH DDIVDGSDSD FVCGVLLEDG STCTTTPIKG RKRCTEHKGK  240
RLSRVSPEKS IPCEVPTRRE CEETDDICGV ILPDMVPCRR TPVSRRKRCE DHKGMRVNAF  300
FFLLNPTERD KTVKEDKSKP KTCTGTNQED SGLNLLCEAT TKNGLPCSRS APKGSKRCWQ  360
HKDKTVDHGS SENVQSATIS QVICGIKLYN GSVCGKAPVK GRKRCEEHKG MRITS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0437.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0491710.0AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project).
GenBankAL0494830.0AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615640.0AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283810.10.0protein EFFECTOR OF TRANSCRIPTION 1
SwissprotF4JU691e-178ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBLR0GZV00.0R0GZV0_9BRAS; Uncharacterized protein
STRINGBostr.7867s0437.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-180