PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0462.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 562aa    MW: 61191.9 Da    PI: 5.4829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0462.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.4e-32179236260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK vkgse+prsYY+Ct++ C+vkkkvers  +++++ei+Y+g+Hnh+k
  Bostr.7867s0462.1.p 179 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPICEVKKKVERSG-EGHIIEIIYTGSHNHPK 236
                          8***************************************9.***************85 PP
2WRKY98.73.8e-31368424258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v +tY g+H+h
  Bostr.7867s0462.1.p 368 SDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTH 424
                          7******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.72173237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-28174237IPR003657WRKY domain
SuperFamilySSF1182906.67E-25176237IPR003657WRKY domain
SMARTSM007742.7E-35178236IPR003657WRKY domain
PfamPF031063.8E-24179235IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-32352427IPR003657WRKY domain
SuperFamilySSF1182905.62E-27360427IPR003657WRKY domain
PROSITE profilePS5081134.28362427IPR003657WRKY domain
SMARTSM007744.5E-35367426IPR003657WRKY domain
PfamPF031066.5E-24369424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MADFDNKAVM VEWFDCSPNH KKRSKAELDR DFSLEYIKKE DSLQASFQET PSCSRGALRE  60
RIAARTGFNA PTLKTEDIFQ STCLTISSPG LSPATLLESP VFLSNPLPSP TTGKLSSLPS  120
DKPKDELFDD ITTSLAFQSI SGSSLDPTNI GLEPDDSQDY EQRQLGGLGD SMASGAPADD  180
GYNWRKYGQK LVKGSEYPRS YYKCTHPICE VKKKVERSGE GHIIEIIYTG SHNHPKPPPN  240
RRSGIGSSGT GLDMQIDGTE QEGFAGTNEN IEWTSPVSEL EYGSHSGSMQ VQSGTQFGFS  300
DAAADAFFRD EDEDDHMSVS LSYDGDVDES ESKRRKLEAI PAEMSGSTRA SREPRVVMRI  360
TSDIDILSDG YRWRKYGQKV VKGNPNPRSY YKCTANGCTV TKHVERASDD FKSVLTTYIG  420
KHTHVVPAAR NSSHVGSGSS GTLQGGLATH NHNVHYPVQH SRSEGLVTAN SSLFDFQPHL  480
RPPSGLSVYI GQSELSDISV PGLTIGQEKL PSLPAPDVGD PAVLMLQLAT EPKVEPVSQQ  540
GLGLSASSLI YREIMSRLPQ I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28179428878Probable WRKY transcription factor 4
2lex_A1e-28179428878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0462.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526490.0AY052649.1 Arabidopsis thaliana WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
GenBankBT0303610.0BT030361.1 Arabidopsis thaliana At4g26440 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867564.10.0probable WRKY transcription factor 34 isoform X2
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLD7MF960.0D7MF96_ARALL; Microspore-specific promoter 3
STRINGBostr.7867s0462.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]