PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0486.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 558aa    MW: 61097.8 Da    PI: 6.9674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0486.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31209266260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  Bostr.7867s0486.1.p 209 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 266
                          8****************************************.***************85 PP
2WRKY106.81.1e-33380438159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Bostr.7867s0486.1.p 380 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 438
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.502203267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-27205267IPR003657WRKY domain
SuperFamilySSF1182907.32E-25206267IPR003657WRKY domain
SMARTSM007748.5E-34208266IPR003657WRKY domain
PfamPF031062.4E-24209265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37365440IPR003657WRKY domain
SuperFamilySSF1182902.35E-29372440IPR003657WRKY domain
PROSITE profilePS5081138.825375440IPR003657WRKY domain
SMARTSM007747.7E-39380439IPR003657WRKY domain
PfamPF031064.1E-26381438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MNPQVNERKE FQVDSSATGD LTARQDSAGG GGGARYKLMS PAKLPISRST DITIPPGLSP  60
TSFLESPVFI SNIKPEPSPT TGSLFKPRPV HISASSSSYT GRTFHQNTFT EQKSSEFEFR  120
PPASNMVYAE LGKHRSEPPV QFQGQGHGSS YSPSSISDAA GSSSELSRPT PPRQMTPTSS  180
DIPAGSDQDE SIQTSQNDSR GSTPSVLADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE  240
VKKLFERSHD GQITDIIYKG THDHPKPQPG RRNSGGLGMA AQEERLEKYP SSTGRDEKGS  300
GVYNLSHPSE QAGDPEVPPI TATDDGGEAA ASNGNKDDTD EDDPFSKRRR MDGAMEITPL  360
VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTAAG CPVRKHVERA  420
SHDPKAVITT YEGKHNHDVP TSKSSSNQDI QPQFRPDETD TISLNLGVGI SSDGPNHTSN  480
EHQHQNQQLV NQTHPNGVNF RFVHASPMPS YYASLNSGMN QYGPRETKNE TQNDDISSLN  540
HSSYPYPPNI GRIQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36207440877Probable WRKY transcription factor 4
2lex_A1e-36207440877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0486.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258370.0AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds.
GenBankAJ6304790.0AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633666.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GYJ60.0R0GYJ6_9BRAS; Uncharacterized protein
STRINGBostr.7867s0486.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein