PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0725.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 442aa    MW: 48309.6 Da    PI: 7.0458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0725.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.64e-072542911052
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +rRR +i +++  L+e +P +      K +Ka++Le ++eY+ 
  Bostr.7867s0725.1.p 254 QRRRGKISEKMKALQEFIPRR-----SKSDKASVLEDVIEYVI 291
                          79******************8.....6**************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.19E-8241298No hitNo description
Gene3DG3DSA:4.10.280.101.5E-11242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.674244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-4254291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-7254299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11254316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGEDDLVELL WKSGQVVRSS QTQRPSSDKP SAPPTILRGS GSGGGEENAP LPFPHLQPQS  60
QPPATATMHH HNLFIQEDEM ASWLHHSYRQ DYFCSELLYP GVASTPATHP QSSVSLAPSP  120
STLHILPPER PTDLMNSSWL RRNIYTSGRA EVGQSIPVVR ELMQVGSSAT PSSSATESCV  180
IPATEGTESQ VSRTFAVPGL GRKGKAVAIE TARTPSSGVC KAETEPIQVQ PATETEFAQD  240
RKRKEREETI AGIQRRRGKI SEKMKALQEF IPRRSKSDKA SVLEDVIEYV IWLQSQIQMM  300
SMGHGTTPPL MYAGNMQQFM PHMGMGMMGM NRPPFIPFTG TPFPKPPHIA GLGPPYPAPH  360
YPFPNIQTSG PSIVHLPTPQ PNVVSNQPQF PAYMNPFSQF LGLHQMQQPP PPLQSQTTSQ  420
LSLSQASTSK ELEDQDNQPT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0725.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634848.10.0putative transcription factor bHLH056 isoform X2
SwissprotQ9SVU71e-165BH056_ARATH; Putative transcription factor bHLH056
TrEMBLR0GU450.0R0GU45_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.7867s0725.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-127bHLH family protein