PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0726.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 373aa    MW: 41186.5 Da    PI: 8.7225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0726.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-14242289355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn  ErrRR++iN+++ +L+el+P +      K +Ka++L  ++eY+k Lq
  Bostr.7867s0726.1.p 242 EMHNVSERRRREKINEKMKTLQELIPRC-----NKSNKASMLDDVIEYVKWLQ 289
                          58*************************8.....6***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-20237306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.091239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-15242293No hitNo description
PfamPF000107.5E-12242289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-22243302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
IMSLVLGFVF LFEIRGEDDR VELLWKSGQV VPSSQTQRPS SDTPPILRGS GSGERNDPLP  60
LPQRPPPLHR QNLFIQGDEM SSWLHHAPPP PPLPQPSAPY GQIIASRRAE NFLRLRGNIL  120
SGGRVEAGPW IPVGLSATTS FSATESNLTP ATKSRPTVIG GVSRTFAVPS RGPKEKTVEI  180
QTVCEIAGTS SSGVEIEPVQ IQPATDIAED RERTEIEETI AGIQGTEEAC GSTSRKRSRA  240
AEMHNVSERR RREKINEKMK TLQELIPRCN KSNKASMLDD VIEYVKWLQM QIQMMSMGHG  300
MMPPMMYAGN MQQFMPHMAM GMMGMNRPPP FIQSYLFPGT PFPRAAHMAG APPPLQVILS  360
QYPLCLFLCS YK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234251RKRSRAAEMHNVSERRRR
2247252ERRRRE
3248253RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0726.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198119e-84AJ519811.1 Arabidopsis thaliana partial mRNA for putative bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873904.11e-128transcription factor bHLH127
SwissprotQ9SVU61e-110BH023_ARATH; Transcription factor bHLH23
TrEMBLD7MD821e-134D7MD82_ARALL; Uncharacterized protein
STRINGBostr.7867s0726.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.17e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]