PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0840.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 258aa    MW: 29812.6 Da    PI: 4.5291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-115799754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr+++P+      +Kl+Ka++ +  ++Y+++L
  Bostr.7867s0840.1.p 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASVIKDSIDYMQEL 99
                         57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0445099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-105399No hitNo description
SuperFamilySSF474593.27E-1654121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1656116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESRSILL  120
ENPIRDYDCV NNFSENQLQD FPDINVMRSK KFKQTDYSTR VQQYPPIEVL EMKVTWMGEK  180
TVVVCITCSK KRETMLQLCK VLESLNLNIL TTNFSSFSSR LSTTLFLQAD EEERSAVEAK  240
IQMAIAAYND PNYLINF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1177300.0AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAK1762010.0AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1762760.0AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK2282010.0AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankBT0058690.0BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438241.10.0PREDICTED: transcription factor bHLH27
SwissprotQ700E31e-153BH027_ARATH; Transcription factor bHLH27
TrEMBLR0F7Y51e-173R0F7Y5_9BRAS; Uncharacterized protein
STRINGBostr.7867s0840.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-144bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]