PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0841.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HB-PHD
Protein Properties Length: 778aa    MW: 87896.4 Da    PI: 4.6324
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0841.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.95.4e-114625051053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            +e L ++F++n  ps++ r +L+k+l+L+ ++V+ WF+N R+
  Bostr.7867s0841.1.p 462 AAVEKLRQVFAENELPSKTVRDRLSKELSLDPEKVSKWFKNARY 505
                          67899*************************************97 PP
2PHD41.92.3e-14191246151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Bostr.7867s0841.1.p 191 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 246
                          6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.09E-14183248IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.0E-12187246IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976189246IPR019787Zinc finger, PHD-finger
CDDcd155046.15E-32191243No hitNo description
SMARTSM002497.7E-10191244IPR001965Zinc finger, PHD-type
PfamPF006281.6E-11191246IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590192243IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.608.1E-13438504IPR009057Homeodomain-like
SuperFamilySSF466891.2E-10449513IPR009057Homeodomain-like
PROSITE profilePS5007112.973450510IPR001356Homeobox domain
SMARTSM003895.0E-11452514IPR001356Homeobox domain
CDDcd000865.31E-9453505No hitNo description
PfamPF000461.6E-8462505IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEESETKGRI KRETEKACVS VERIGSTLLS ALVKKGKETS NKRNPKPNKR KTEEEICSKS  60
RNKKYSRGWV HCEEEEEKGK KTRKRKSKRQ QKDNKVEVDD SLRLQRRTRY LLIKMKMQQN  120
LIDAYATEGW KGQSREKIRP DKELERARKQ ILNCKLGLRD AIRQLDLLSS VGSMEEKVIA  180
PDGSIHHDHI FCAECNSREA FPDNDIILCD GTCNRAFHQK CLDPPLETES IPPGDQGWFC  240
KFCDCKMEII DTMNAQIGTH FPVDSNWQDI FKEEASLPIG SEATLNNEED WPSDDSNDDD  300
YDPEMRENGG VSSSNVSGGG VGDNDGESIS TSLSLSSDGV ALSTGSWEGH GFSNMVEQCE  360
TSNEETVCGP RQRRTVDYTK LYYEMFGKDA VLQEQGSEDE DWGPNDRRKR KKESDVISKL  420
VNMCESSKKD QDAVEIPEQS ERDSVSVEDK GGRRPMFRLP RAAVEKLRQV FAENELPSKT  480
VRDRLSKELS LDPEKVSKWF KNARYMALRN RKTESVKQPE HSKMVSGRDS GPEAVMENNT  540
DTNEAQNTLD ETVPPGFNDS ATNQKTISPC NNNQEVPEDS KTVSGGDSGP EAVMENNIDT  600
NEVQDTLDET VPPGFNDSAT NQKILSPCND NQEEIQQANV SFPTPTDEIQ KYLEQNDSSF  660
ALVPHEELSS EMSLKIAVEE KETESKTTEE PHEELSSEMS LKTAEEEGTE SKMTEEEEFE  720
AVMEMLCRTE NKLLDVTQRL ERFKTPKGRK KLGKSSSSLL EEDSVVYVPI AEIMEKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186TRKRKS
2407411RKRKK
3407412RKRKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0841.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283148.10.0pathogenesis-related homeodomain protein isoform X2
TrEMBLR0F3V50.0R0F3V5_9BRAS; Uncharacterized protein
STRINGBostr.7867s0841.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A