PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0841.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HB-PHD
Protein Properties Length: 605aa    MW: 67611 Da    PI: 4.1737
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0841.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.33.9e-112893321053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            +e L ++F++n  ps++ r +L+k+l+L+ ++V+ WF+N R+
  Bostr.7867s0841.2.p 289 AAVEKLRQVFAENELPSKTVRDRLSKELSLDPEKVSKWFKNARY 332
                          67899*************************************97 PP
2PHD42.41.6e-141873151
                         SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD  1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51
                         +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Bostr.7867s0841.2.p 18 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 73
                         6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.26E-141075IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-121473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.9761673IPR019787Zinc finger, PHD-finger
CDDcd155049.90E-321870No hitNo description
SMARTSM002497.7E-101871IPR001965Zinc finger, PHD-type
PfamPF006281.1E-111873IPR019787Zinc finger, PHD-finger
PROSITE patternPS0135901970IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.3E-13265331IPR009057Homeodomain-like
SuperFamilySSF466898.55E-11276340IPR009057Homeodomain-like
PROSITE profilePS5007112.973277337IPR001356Homeobox domain
SMARTSM003895.0E-11279341IPR001356Homeobox domain
CDDcd000866.10E-10280341No hitNo description
PfamPF000461.2E-8289332IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MEEKVIAPDG SIHHDHIFCA ECNSREAFPD NDIILCDGTC NRAFHQKCLD PPLETESIPP  60
GDQGWFCKFC DCKMEIIDTM NAQIGTHFPV DSNWQDIFKE EASLPIGSEA TLNNEEDWPS  120
DDSNDDDYDP EMRENGGVSS SNVSGGGVGD NDGESISTSL SLSSDGVALS TGSWEGHGFS  180
NMVEQCETSN EETVCGPRQR RTVDYTKLYY EMFGKDAVLQ EQGSEDEDWG PNDRRKRKKE  240
SDVISKLVNM CESSKKDQDA VEIPEQSERD SVSVEDKGGR RPMFRLPRAA VEKLRQVFAE  300
NELPSKTVRD RLSKELSLDP EKVSKWFKNA RYMALRNRKT ESVKQPEHSK MVSGRDSGPE  360
AVMENNTDTN EAQNTLDETV PPGFNDSATN QKTISPCNNN QEVPEDSKTV SGGDSGPEAV  420
MENNIDTNEV QDTLDETVPP GFNDSATNQK ILSPCNDNQE EIQQANVSFP TPTDEIQKYL  480
EQNDSSFALV PHEELSSEMS LKIAVEEKET ESKTTEEPHE ELSSEMSLKT AEEEGTESKM  540
TEEEEFEAVM EMLCRTENKL LDVTQRLERF KTPKGRKKLG KSSSSLLEED SVVYVPIAEI  600
MEKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234238RKRKK
2234239RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0841.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283148.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLR0F3V50.0R0F3V5_9BRAS; Uncharacterized protein
STRINGBostr.7867s0841.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]