PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0954.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 316aa    MW: 33595.5 Da    PI: 7.0054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0954.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11140185555
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Bostr.7867s0954.1.p 140 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 185
                          99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.53E-13133189No hitNo description
SuperFamilySSF474595.89E-17133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9140185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNSSSLLTPS SSSPHLQSPA TFDHDDFLHH IFSSTAWPSS VLDEAPPPTP DCAAVPGFHH  60
HDVDSRNQIT MIPLSHNHPN DALFNGFSTG SLPFHLPQGS AGQTQSQSQA TASTTTGGTT  120
APTQTKPKVR ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNGNKTDK ASMLDEIIDY  180
VKFLQLQVKV LSMSRLGRAA SVSSQISEDA GGSHENTSSS GENQTATAKM TEHQVAKLME  240
EDMGSAMQYL QGKGLCLMPI SLATTISTAT CPSRNNPFVK DTGVPLSPNL STTTIANGNA  300
SSLVTVKDAP TVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0954.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886010.0AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320095.10.0LJRHL1-like 2
SwissprotQ8S3D50.0BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A384LMW20.0A0A384LMW2_ARATH; LRL2
TrEMBLC0SVK80.0C0SVK8_ARATH; Uncharacterized protein At4g30980 (Fragment)
STRINGBostr.7867s0954.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-167LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]