PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1055.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 777aa    MW: 85544.7 Da    PI: 7.9423
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82.1e-18285384198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Bostr.7867s1055.1.p 285 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE 373
                          99**************************555566778***************9989999999***9.********************654 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv++ ++
  Bostr.7867s1055.1.p 374 -PEGKLVMGYRK 384
                          .77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-30278389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-20282385IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-22283384No hitNo description
SMARTSM010194.9E-20285385IPR003340B3 DNA binding domain
PfamPF023621.3E-15285384IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053285386IPR003340B3 DNA binding domain
PROSITE profilePS5105014.948514564IPR011124Zinc finger, CW-type
PfamPF074969.6E-14519561IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MESTKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG SAYEQSIFCQ VFHAKDSGWR  60
ECNSCDKRLH CGCIASRFMM EFRDNGGVTC ISCAKKSALL SMNVSQESNG RDVPSFASAE  120
HVGSVLERTN LKHLLHFQRI GPTQSSLQMK QEESLLPSRL DTLRHTTERK ELQELSAQPN  180
LSISLGPTLM TSPFHDAVVD DRSKTTSIFQ LAPRSRQLLP KPANSAPTAA GMEPNGSLVS  240
QIHVARPPPE GRGKTQLLPR YWPRITDQEL QQLSGHSNSK IIPLFEKVLS ASDAGRIGRL  300
VLPKACAEAY FPPISQPEGL PLKIQDIKGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ  360
LQAGDTVTFS RTEPEGKLVM GYRKATNSTA TQMFKGSSEP NLNMFSNNLN LGCGDINWSK  420
LEKSEDMGKD NLFLQSSLTS ARKRVRNIGT KSKRLLIDSV DVLELKITWE EAQELMRPPQ  480
SAKPSIFTLE DQDFEEYDEP PVFGKRTVFV SRQTGEQEQW VQCDACGKWR RLPVDTLLPP  540
KWFCSDNLLD PARSSCSAPD ELSPREQDTL VRQSKEFKRR RLASSNEKLN QAQEASAVDT  600
LANAGITTTG EQGEIAVAAT TKHPRHRAGC SCIVCSQPPS GKGKHKPSCT CTVCEAVKRR  660
FKTLMMRKRN RGEAGQASQQ AQSESRDETE VESIPAVEAA AGGNIDLNSD PGASRVSMMS  720
LLQAAAFPLE AYLKQKAISN TAAEQQSSDM VSTEHGSSSA AQEQDKDTNG AHEPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-692633922131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1577581KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280130.0AK228013.1 Arabidopsis thaliana mRNA for predicted protein, complete cds, clone: RAFL14-53-K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437969.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLR0F3W50.0R0F3W5_9BRAS; Uncharacterized protein
STRINGBostr.7867s1055.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]