PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1191.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 251aa    MW: 29076.4 Da    PI: 10.3878
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171964147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ede l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
  Bostr.7867s1191.1.p 19 RGHWRPVEDENLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                         899****************************9.************96 PP
2Myb_DNA-binding551.9e-1771114146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
  Bostr.7867s1191.1.p  71 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                          689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9591469IPR017930Myb domain
SuperFamilySSF466892.85E-2917112IPR009057Homeodomain-like
SMARTSM007171.4E-141867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-252072IPR009057Homeodomain-like
CDDcd001671.25E-132263No hitNo description
PfamPF139219.8E-172282No hitNo description
PROSITE profilePS5129418.44870120IPR017930Myb domain
SMARTSM007171.5E-1470118IPR001005SANT/Myb domain
CDDcd001676.29E-1173113No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEMSRGSNSF DNKKPSCQRG HWRPVEDENL RQLVEQYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLKAHRIQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RENFSSTATS TFNQTWHNVL SPSSSLTRLN RSQFGLWRYQ KDKSRGLWPY SFVPAPRNDQ  180
FGSSSVSNFR HEIYLERRTS KELVDHHNHI FHAATPDHNK TSGEDGPSMG DDVGKNNVTF  240
IDFLGVGLTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-34151193107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1191.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1425170.0AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds.
GenBankAY5196110.0AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437762.11e-175PREDICTED: myb-related protein A-like
TrEMBLR0GN171e-173R0GN17_9BRAS; Uncharacterized protein
STRINGBostr.7867s1191.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-171myb domain protein 69