PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1234.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 354aa    MW: 38777.5 Da    PI: 4.7172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102833231055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Bostr.7867s1234.1.p 283 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 323
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14275339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12278332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-12282327No hitNo description
PfamPF000101.4E-7283323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYTHATE EADFMNQLLA SYDHPGAVSS SGTAGGDHQG LYWNLGSHQN  60
HLSLVSEAGS FCFSQESSSY SAGNSGYYTV VPPTAEENQN GTMDFGMEDV TINTNSYLVG  120
EETSECDVEI YSSVKTLLPL ETVVENHNDE ESLLQSEISV TTTDHQKSLT GSKKRSRATS  180
TDKNKRARVN KKGQKSIDIS GDNNGGEEEE REKLKKRKNG AMMSRQNSST TFCSEEESNC  240
ADQDGGGEDS SSKEEDASKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQNLV  300
PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPI AFNGMDIGLS SPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1234.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2281100.0AK228110.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-58-P18.
GenBankBT0031370.0BT003137.1 Arabidopsis thaliana At4g33880 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282823.10.0transcription factor bHLH85 isoform X1
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLR0F2Y80.0R0F2Y8_9BRAS; Uncharacterized protein
STRINGBostr.7867s1234.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-177ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]