PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1421.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 262aa    MW: 27294.1 Da    PI: 4.9496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1421.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05129150223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C++Cg+ F ++     H+r H
  Bostr.7867s1421.1.p 129 VCHICGRGFGSWKAVFGHMRAH 150
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKVDDSDGER EDSDKQWSDD ESETREIVLG LPALSISRIF GDSSVVEREE EEARLNEQAV  60
VAAELVMAAA EEAVLKGKSK EGGSGGKKKS RPRKSKKTDD EADGSGKGEA KKPKKKGAEL  120
THQPKGPPVC HICGRGFGSW KAVFGHMRAH RERNYQGFLP PPTFSAAAEV FSIPGQNSAF  180
VLLTAGGGSS AGFVGGGGSS GGFSASGGGG ATGGEGRKGL GIDLNVEPVE EVEEATESGS  240
IAKFDLNKSP LKDEEEEDKA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1421.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285977.11e-111uncharacterized protein LOC17880279
TrEMBLR0H2J11e-110R0H2J1_9BRAS; Uncharacterized protein
STRINGBostr.7867s1421.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-66C2H2 family protein