PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1430.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 248aa    MW: 26090.8 Da    PI: 4.6605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041144165223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          kC++C +sF ++     H+r H
  Bostr.7867s1430.1.p 144 KCNICERSFGSWKAVFGHLRQH 165
                          7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSNPDERRMI TEEEINEYSN DGDYQCSDEE GEIRELVLAL PALRLTESSN VDETIPKEAA  60
IAAKLIVAAA EEAEGKKDQT LSKSGGFIGT SKNKKVGRPR VLLEAIAGAP GSTVIGSTED  120
KEPIKKAKKK GSSQLTNPPQ GPPKCNICER SFGSWKAVFG HLRQHKDRGY QGFLPPPTFN  180
AAEEGFGGTV AASSGGGGFG SGTGGLGIDL NADPVEEEGG SGSGFTPKFD LNRSPPHDAE  240
EEEDKAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432242.11e-113PREDICTED: uncharacterized protein LOC104716557
TrEMBLR0H0C21e-101R0H0C2_9BRAS; Uncharacterized protein
STRINGBostr.7867s1430.1.p1e-179(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-70C2H2 family protein