PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s1468.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 269aa MW: 29551.9 Da PI: 6.5263

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s1468.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.4e-07	43	87	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + erE+ RRd++++ f eL l ++ +K +K++iL+ +++ +k+ Bostr.7867s1468.1.p 43 KAEREKPRRDKLKEQFLELGNALDPN----RPKTDKVSILTDTIQVLKD 87 589******************997....79**********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-13	37	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.211	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.33E-4	41	93	No hit	No description
Pfam	PF00010	3.1E-5	43	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	43	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-6	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDQSKKPKTC SDDSSASSSS SSGHNLRAEM VVEVKKEAVC SRKAEREKPR RDKLKEQFLE 60 LGNALDPNRP KTDKVSILTD TIQVLKDVMS QVERLKAEYA TLSQESRELI HEKSELSEEK 120 ATLKSDIEIL NAQYQHRVRS MVPWIPHYSY PIPVVAITQG QSTFIPYSAS FVNPLIEEAS 180 IQQRSSSSGA SSKHDSKSKS LDQGNDQKDD VGLELELKIH ASSLAQQDVS GKEKKESLTP 240 TANSSNSYSS SQVVQDSSPG GVNDILKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s1468.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493720	1e-173	AB493720.1 Arabidopsis thaliana At4g36060 mRNA for hypothetical protein, partial cds, clone: RAAt4g36060.
GenBank	AF251696	1e-173	AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285497.1	1e-147	transcription factor bHLH11 isoform X1
Swissprot	Q8W2F2	1e-137	BH011_ARATH; Transcription factor bHLH11
TrEMBL	R0H1A0	1e-146	R0H1A0_9BRAS; Uncharacterized protein
STRING	Bostr.7867s1468.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.1	1e-112	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.7867s1468.1.p

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]