PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1543.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 733aa    MW: 80908 Da    PI: 6.785
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1543.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-095125491954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Bostr.7867s1543.1.p 512 FEHflHPYPSDTDKHLLARQTGLSRNQVSNWFINARVR 549
                          664459******************************88 PP
2BELL120.95.4e-39371441272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g g+a pYt+lA+ka+SrhFrcLkda+a q+
  Bostr.7867s1543.1.p 371 RIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGQGAALPYTALAQKAMSRHFRCLKDAVAAQL 441
                          789*****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-76300439IPR006563POX domain
PfamPF075267.2E-49305438IPR006563POX domain
PROSITE profilePS5007112.536490553IPR001356Homeobox domain
CDDcd000868.33E-12493554No hitNo description
SMARTSM003897.5E-9493557IPR001356Homeobox domain
SuperFamilySSF466894.6E-17495560IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28496559IPR009057Homeodomain-like
PfamPF059207.6E-18510549IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MGIAKTSLTT TILLKTLHNN SMSQDYHHHH HQHQGGIFNF SNGFDRSDSP NLITQQKQIQ  60
RVEMDEESSV AGGGIPVYET AGMLSEMFNF PGSSRGGRDL DHGQSFQSNR QLLEEQHQNI  120
PAMNATDSAT ATAAAMQLFL MNPPPPQQPP SPSSTSTTRS HHNSSTLHML LPSTNTTHHQ  180
SYTNNMSMHQ HHQQLTWQSP SSDHQHHHHH HHNSQTEIGT VHVENNGGQG LSLSLSSSLE  240
AAAKAEEYRN IYYGANSSNA SSHHQYNQFK TLLANSSQHH QVLNQFRSSP AAAAASSSSI  300
EAVNILRNSR YTTAVQELLE EFCSVGRGFL KKNKLRNSSN PNTSGGDGGG GSSPSSAGAI  360
KDHPPLSASN RIEHQRRKVK LLTMLEEVDR RYNHYCEQMQ MVVNSFDIVM GQGAALPYTA  420
LAQKAMSRHF RCLKDAVAAQ LKHSCELLGD KDGTGISSSG LTKGETPRLR LLEQSLRQQR  480
AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP SDTDKHLLAR QTGLSRNQVS  540
NWFINARVRL WKPMVEEMYQ QESKEREREE ELEEENEEDQ ETKNSNNDKS TKSNNNESNF  600
TAARTTSQTP ITTAPGVSDE AVATGHRLKS DINAYENDPS SLLLPSSYSN AAASTAVSDE  660
LGSRYGGSAA FSAVATCQQG VGGFDDADMD DVNVIRYGTN PTGDVSLTLG LRHAGNMPDK  720
DPSFCVREFG GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16499557563Homeobox protein Meis2
3k2a_B2e-16499557563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1543.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0504590.0AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634772.10.0BEL1-like homeodomain protein 2 isoform X1
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLR0GH260.0R0GH26_9BRAS; Uncharacterized protein
STRINGBostr.7867s1543.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]