PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1634.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 246aa    MW: 28090.3 Da    PI: 5.4231
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1634.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.64.9e-12133186558
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          ++ +r+++NRe+A+rsR RK+  i++L++ v +L  eN++L +++     + ++
  Bostr.7867s1634.1.p 133 RKRKRMESNRESAKRSRMRKQSHIDNLTNQVNQLALENRELENRIRLVLHQLQR 186
                          67899************************************9998776666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-12122186No hitNo description
SMARTSM003387.6E-16129193IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.254131194IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-10133186No hitNo description
PfamPF001703.8E-10133179IPR004827Basic-leucine zipper domain
CDDcd147022.26E-18134185No hitNo description
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLSTVPAFSF SEPGLVNQFS GFQTGFTPWE WDCSDLFSVD QMSLEPAVPS PCYGESDTGS  60
VRINSGYHNM KTGSDESCPG SDDANQSDGL PCSQAKEPDS DDPKQLTPIT SSGSGEQNPN  120
RKNLSQPEMT DERKRKRMES NRESAKRSRM RKQSHIDNLT NQVNQLALEN RELENRIRLV  180
LHQLQRVNTD NNRLVTEQEI LRLRLSEMRR ILIIRQLQQQ QQWELHNRRM IMTEQNPSSI  240
IDQLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1634.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937251e-154AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730.
GenBankAL0357091e-154AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project).
GenBankAL1615921e-154AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026871e-154CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086601.11e-149PREDICTED: light-inducible protein CPRF2-like
TrEMBLR0FAV81e-142R0FAV8_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.7867s1634.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-137basic leucine-zipper 7