PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8169s0043.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 94aa    MW: 10319.6 Da    PI: 4.8954
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8169s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57335.72.4e-115284637
               DUF573  6 l.wseeDeivlLqGlidfkaktgkspsddidaf 37
                         + w eeDei+lLqG+idfka tgk+p+dd +++
  Bostr.8169s0043.1.p 52 IkWDEEDEILLLQGMIDFKAITGKNPFDDDKQV 84
                         55**************************86654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGEVNTNRSK KKEVCGGSGE LQLTGKKQKN EETLTNKDVN VNDAKMASSQ GIKWDEEDEI  60
LLLQGMIDFK AITGKNPFDD DKQVMVHEGG KCF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8169s0043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870618.18e-25probable transcription factor At4g00232
SwissprotQ3EAE75e-23STKLL_ARATH; Probable transcription factor At4g00232
TrEMBLD7MIR82e-23D7MIR8_ARALL; Uncharacterized protein
STRINGBostr.8169s0043.1.p2e-61(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16691712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00232.12e-25DNA-binding storekeeper protein-related transcriptional regulator