PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8819s0047.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BES1
Protein Properties Length: 683aa    MW: 76363.3 Da    PI: 5.6184
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8819s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822160.41.2e-49782271145
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          gg+g+++++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+    ++++  ++s+
  Bostr.8819s0047.1.p  78 GGKGKREREKEKERTKLRERHRRAITSRMLSGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSI 163
                          6899************************************************************************....8889999999 PP

               DUF822  91 esslq.sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
                          es+l+ s+ k++a+a+   +++++++ ++ +sp+slds+ +a++        +  +p++sv +l
  Bostr.8819s0047.1.p 164 ESPLSsSTFKNCAKAALDCQQHSVLRIDENLSPVSLDSVVIAESdhpgngryTGASPITSVGCL 227
                          999988899********************************99888888777677777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-4779226IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.59E-159246680IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.6E-166249679IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.3E-81254643IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53285299IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53306324IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53328349IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53421443IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53494513IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53528544IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53545556IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53563586IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-53601623IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MHTLNNTTGS QDPNLDPIPD PDQFPNRNHN HPQSRRPRGF AAAAAAASIG PTESDVNNGN  60
IAGIGGGEGS GGGGGGGGGK GKREREKEKE RTKLRERHRR AITSRMLSGL RQYGNFPLPA  120
RADMNDVIAA LAREAGWSVD ADGTTYRQSH QPNHVVQYPT RSIESPLSSS TFKNCAKAAL  180
DCQQHSVLRI DENLSPVSLD SVVIAESDHP GNGRYTGASP ITSVGCLEAN QLIQDVHSTE  240
PRNDFTESFY VPVYAMLPVG NINNFGQLVD PEGVRQELSY MKSLNVDGVV IDCWWGIVEG  300
WNPQKYVWSG YRELFNLIRD FKLKLQVVMA FHEYGGNASG NVIISLPQWV LEIGKDNPDI  360
FFTDREGRRS FECLNWSIDK ERVLHGRTGI EVYFDFMRSF RSEFDDLFVE GLIAAVEIGL  420
GASGELKYPS FPERMGWIYP GIGEFQCYDK YSQSNLQKEA ESRGFVFWGK GPENAGQYNS  480
QPHETGFFQE RGEYDSYYGR FFLNWYSQLL IGHAENVLSL ANLALEETKI IVKIPAIYWS  540
YKTASHAAEL TAGYYNPSNR DGYSLLFETL KKYSVTVKFV CPGPQMSPNE HEEALADPEG  600
LSWQVINAAW DKRLLIGGEN AITCFDREGC MRLIDIAKPR NHPDNYHFSF FTYRQPSPLV  660
QGSTCFPDLD DFIKSMHGDI QR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11625067911444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8819s0047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494622.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLD7MUR10.0D7MUR1_ARALL; Beta-amylase
STRINGBostr.8819s0047.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]