PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8819s0105.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 438aa    MW: 47886.8 Da    PI: 8.3794
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8819s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.45e-34214314198
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdq 86 
                          k+fqrl+se+Dei+lLqG++df+ ++g +p++d daf+ +vkk i+f+++k+q+v+K++rLKkKf + vkk     ks+++++f+k+ dq
  Bostr.8819s0105.1.p 214 KMFQRLFSETDEIALLQGMLDFTYTKG-DPYEDSDAFCIYVKKLIHFDATKNQIVTKLQRLKKKFVNTVKKslkkGKSEDDIVFAKDIDQ 302
                          58************************9.9**************************************999988878999*********** PP

               DUF573  87 kifelskkiWgs 98 
                          k+fel++kiWg+
  Bostr.8819s0105.1.p 303 KAFELARKIWGT 314
                          **********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-26216313IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAPKKAEVID NPPVGSSSEE EESGSSGEES ESSAEVSKKD ESSKKPESES EGESDSESDS  60
ESEPAKTSKQ PVVAKAKPKT DSAVTVPERS TSKRPLEETE SEVNKKLKKS SAEVSKKDKS  120
SKKPESDSEG ESDSEGESDS ESEPAQTIKQ PVVAKAKPKT SGSAVTVPES STAKRPLKKA  180
ESEANKKLKT SETENVEKPI TNDAKKISGD DAKKMFQRLF SETDEIALLQ GMLDFTYTKG  240
DPYEDSDAFC IYVKKLIHFD ATKNQIVTKL QRLKKKFVNT VKKSLKKGKS EDDIVFAKDI  300
DQKAFELARK IWGTNGVLAS KSRKKLGGTP APKDMKLATP KKPEEAKTPE KREAKVVNTS  360
LSIGREIAVF FNAENSSSCG LDESTITAVW KKVVDGADKT EVEEKWKKIK AKQVELCLQR  420
TQLVNETAKL IFKAYES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8819s0105.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283973.11e-170GLABROUS1 enhancer-binding protein-like isoform X1
SwissprotQ9SB421e-156STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W31e-168R0F5W3_9BRAS; Uncharacterized protein
STRINGBostr.8819s0105.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-147DNA-binding storekeeper protein-related transcriptional regulator