PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8819s0128.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WOX
Protein Properties Length: 319aa    MW: 35404.8 Da    PI: 5.852
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8819s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54e-1752111256
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                          ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k
  Bostr.8819s0128.1.p  52 KPRWNPKPEQIRILESIFNSgIVNPPRDEIQRIRIRLqeygQIGDANVFYWFQNRKSRAK 111
                          89*****************99************************************998 PP
2Wus_type_Homeobox109.32.1e-3551113264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +++RW+P+peQi+iLe++++sG+++P+++eiqri+ +L+eyG+i+d+NVfyWFQNrk+R + k
  Bostr.8819s0128.1.p  51 PKPRWNPKPEQIRILESIFNSGIVNPPRDEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKYK 113
                          579********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.94448113IPR001356Homeobox domain
SuperFamilySSF466894.71E-1150114IPR009057Homeodomain-like
SMARTSM003895.7E-650117IPR001356Homeobox domain
CDDcd000861.45E-751113No hitNo description
PfamPF000461.0E-1452111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-652111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSSNKNWPSM FKSKPCNNNH HHQYEIDTPS YMHYSNCNIS PSFSSDRVPD PKPRWNPKPE  60
QIRILESIFN SGIVNPPRDE IQRIRIRLQE YGQIGDANVF YWFQNRKSRA KYKLRVHHRN  120
PKMSKKDKII SPGIDADHCF GLVNQEPGLF PVQNNEMVVT EPAGYLSPVQ NDPHAAQSGF  180
GFGDFVVPVA FPDVNNGLEI DETLEKIPAI NFYGGDGNGG GGNCFSPVPL TVPLTTNQSQ  240
ERAVVLSGGE DAGDCVSPVR LTVFINDMPF EIAAGLFNVK EAFGNDAVLI NSFGQPILTD  300
EFGVTFQPLQ NGAVYYLI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8819s0128.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514000.0AY251400.1 Arabidopsis thaliana WOX8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640913.10.0WUSCHEL-related homeobox 8
SwissprotQ6X7J50.0WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLR0EV120.0R0EV12_9BRAS; Uncharacterized protein
STRINGBostr.8819s0128.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142621619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.10.0WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]