PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8819s0132.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WOX
Protein Properties Length: 138aa    MW: 15801.4 Da    PI: 6.723
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8819s0132.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.81e-1450110256
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56 
                          ++ ++++++q ++Le+lF   + +ps +++++++ kl     ++++ +V+ WF+Nr+   k
  Bostr.8819s0132.1.p  50 KPEWKPNQHQAQILEDLFIGgTVNPSLTDIKQITIKLqnfgeEVEDVDVYKWFHNRKFSLK 110
                          899****************99***********************************98776 PP
2Wus_type_Homeobox60.24.7e-2050112364
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk.iedkNVfyWFQNrkaRerqk 64 
                          ++ W P+++Q +iLe+l+  G+++P+   i++it +L+++G+ +ed  V+ WF Nrk   ++k
  Bostr.8819s0132.1.p  50 KPEWKPNQHQAQILEDLFIGGTVNPSLTDIKQITIKLQNFGEeVEDVDVYKWFHNRKFSLKHK 112
                          678**************************************55**************776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-742115IPR009057Homeodomain-like
PfamPF000461.5E-1250110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-453116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSSSSNKNSN KDHDRHNHQG QNDDIHTPSF MHNFNCNISS PSSPVVSDPK PEWKPNQHQA  60
QILEDLFIGG TVNPSLTDIK QITIKLQNFG EEVEDVDVYK WFHNRKFSLK HKLRDAKQSR  120
QESKEINQVP VINNEVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8819s0132.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0066987e-79AB006698.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19.
GenBankCP0026887e-79CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887161.12e-62LOW QUALITY PROTEIN: WUSCHEL-related homeobox 8
TrEMBLQ9FNM17e-43Q9FNM1_ARATH; Uncharacterized protein
STRINGBostr.8819s0132.1.p9e-97(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3049222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46010.16e-47WOX family protein