PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9017s0008.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 474aa    MW: 53161.1 Da    PI: 7.473
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9017s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.1e-35241142101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d+++++++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k
  Bostr.9017s0008.1.p  24 FLVKTYEMVDDSTTDQIVSWSSNNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQK 104
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Bostr.9017s0008.1.p 105 HLLKNIHRRK 114
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-6020113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-3720112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-3520113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3024113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.287.404.7E-4113184IPR015866Serine-tRNA synthetase, type1, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSTTDQI VSWSSNNNSF IVWNHAEFSR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFSNDDFI KDQKHLLKNI HRRKPIHSHS  120
LPPALSTDQE RAALQEQMDK LSREKAAIEA KLLKFKQQKA VAKHQFDEMT EHVDDMEKRQ  180
KKLLNFLEKA IRNPTFIKNF GRKVEQLDIS AYNKKRRLPQ VEQSKPPSED SHLDNSSGSS  240
RPESGNIFHQ NFSNKLRLEL SPAVSDMNMV SHSIQSSNEE GASPKGILSG GDPKTTLTRR  300
EGLPFAPEAL ELADTGTCPR RLLLNDNTRV EILQQRLTSS EETDGSFSCH LNLTLASAPL  360
PDKTASQIAK TTHKSQEIGR YTELNFNSIG TSASEKNRGR QQEVAVGGSQ ANAAPPARVN  420
DVFWEQFLTE RPGSSDNEEA SSTYRGNPYE EQEDRRNGNM ILRNTKNIEQ LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2431131129Heat shock factor protein 1
5d5v_B5e-2431131129Heat shock factor protein 1
5d5v_D5e-2431131129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9017s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395280.0AY039528.1 Arabidopsis thaliana AT4g13980/dl3030c mRNA, complete cds.
GenBankBT0010560.0BT001056.1 Arabidopsis thaliana At4g13980/dl3030c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450121.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLR0GW900.0R0GW90_9BRAS; Uncharacterized protein
STRINGBostr.9017s0008.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]