PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9345s0035.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 255aa    MW: 28122.9 Da    PI: 9.3157
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9345s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.93e-30108161155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Bostr.9345s0035.1.p 108 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 161
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.19105164IPR017930Myb domain
SuperFamilySSF466895.2E-20105165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-30107166IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-24109161IPR006447Myb domain, plants
PfamPF002497.0E-7111160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MREDNPNCFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHHHQ  60
KVQSSTTPTT PTPTPPQPMM MNSDFGGGDS TDLGSGSVGG EPARTLKRPR LVWTPQLHKR  120
FVDAVGHLGI KNAVPKTIMQ LMSVEGLTRE NVASHLQKYR LYLRRMQGGN GNGISGGHVI  180
VSDSATDRLF ASSPVPAHFL SPHEYLMPPL EHSYMGKHVI TQQNQVVRNL RYEDSEYGNG  240
DAGRKILKLF PAGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-32108164157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9345s0035.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0024090.0AC002409.3 Arabidopsis thaliana chromosome 2 clone T20B5 map CIC11C08, complete sequence.
GenBankAC0042610.0AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence.
GenBankAY0723810.0AY072381.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds.
GenBankBT0000980.0BT000098.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505861.11e-153PREDICTED: transcription factor PCL1-like
SwissprotO222101e-142MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A178VYV11e-140A0A178VYV1_ARATH; MYBC1
STRINGBostr.9345s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40970.11e-117G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]