PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9600s0046.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 106aa    MW: 12096.8 Da    PI: 9.1962
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9600s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.31.1e-1080104125
              G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                          k+rl W+++LH++Fv+av++LGG++
  Bostr.9600s0046.1.p  80 KARLWWSSDLHDCFVNAVKKLGGPN 104
                          68*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-877102IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-980105IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MKKKEKGKEV VTFEENPSTS VHHLDHFHHK EKDSMLLREQ EIEVLLQKKS KKDNTEKAGI  60
EKGKTSSKIT PCIFYTSDEK ARLWWSSDLH DCFVNAVKKL GGPNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9600s0046.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064131e-49AC006413.4 Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete sequence.
GenBankCP0026851e-49CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886266.14e-51transcription repressor KAN1
TrEMBLD7L9C81e-49D7L9C8_ARALL; Uncharacterized protein
STRINGBostr.9600s0046.1.p1e-71(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.19e-48G2-like family protein