PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9638s0027.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 233aa    MW: 26441.5 Da    PI: 9.9219
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9638s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.46.3e-11851324397
               DUF573  43 ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                          +s sf+v+++ l++Kir+L  K+ +k k+       sf k+hdq +f+l+k+iW 
  Bostr.9638s0027.1.p  85 SSFSFEVNTKRLIDKIRHLESKYMNKGKN-------SFFKAHDQTCFKLAKSIWV 132
                          5789*********************9999.......9*****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.9E-885131IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSERHLKPLV SLSVDEDSDN YSFEGDEPIG LSSIRVTVKA SKKKNEKVRS SGEVQPSKMK  60
RCRLCSEGTS TDVTLKQAEK REQISSFSFE VNTKRLIDKI RHLESKYMNK GKNSFFKAHD  120
QTCFKLAKSI WVAEGKSNEK SKKMDSLKQD DKSKVNSFLF RSVECLGVAV KDKWSVVPIA  180
TKKKVEEKLE LLKANELECK KTEEMLKSNK HECMKQKAEL LNEVISVITQ AN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9638s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176815.19e-44DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ9C5178e-45STKLE_ARATH; Probable transcription factor At1g66420
TrEMBLA0A178W2Y03e-43A0A178W2Y0_ARATH; Uncharacterized protein
STRINGBostr.9638s0027.1.p1e-167(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.13e-33DNA-binding storekeeper protein-related transcriptional regulator