PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.9638s0100.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 288aa MW: 31170.3 Da PI: 6.2521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.9638s0100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	203	244	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Bostr.9638s0100.1.p 203 AKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 244 69****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.8E-12	194	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.983	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	196	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.97E-12	196	248	No hit	No description
SMART	SM00353	3.5E-11	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-6	203	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MALINDYRNE PIYISNPNSS EDLSSPETYG LDGGASASSS STINSDHQQN QGFVFYPSGE 60 TIEDHNSLMN FNGSSFFSFD HHRNFIPPTN GDSAFSVLDG NMSYGYHQMD SVSPRVTKGQ 120 NYFEITSSFG LTSNSASKPA TNLGNGDLLY FDSTIVNTGS KHESASPKPA GNKRPSTGEN 180 TQASKKAKPK ATTSPKDPQS LAAKNRRERI SERLKVLQEL VPNGTKVDLV TMLEKAIGYV 240 KFLQLQVKVL AADEFWPAQG GKAPDISQVK DAIDAILSSS QQDRNSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.9638s0100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488615	8e-96	AF488615.1 Arabidopsis thaliana clone bHLH083 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AY128310	8e-96	AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds.
GenBank	BT006320	8e-96	BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435690.1	1e-165	PREDICTED: LOW QUALITY PROTEIN: putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-160	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	D7MII2	1e-161	D7MII2_ARALL; Basic helix-loop-helix family protein
STRING	Bostr.9638s0100.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-149	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Bostr.9638s0100.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]