PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9638s0125.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YC
Protein Properties Length: 191aa    MW: 21801.1 Da    PI: 8.4735
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9638s0125.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC99.82.1e-3158153298
                NF-YC   2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                          l++fw+++ +++  + + +lPlari+k++k+d++vkm+s+++ vll ka e+fi e+tlr+w ++++++r+t++ +di +a+++++i+d 
  Bostr.9638s0125.1.p  58 LEMFWAHH-NSTGLYDKLDLPLARIRKVMKSDPQVKMVSSDSNVLLGKASEIFIQEVTLRAWRQTQSCSRNTIRSCDIYKALKSSVIYDE 146
                          78999876.556678899************************************************************************ PP

                NF-YC  92 lvdivpr 98 
                          l+d    
  Bostr.9638s0125.1.p 147 LTDLASF 153
                          **98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.24E-1868142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.1E-2173137IPR009072Histone-fold
PfamPF008084.9E-1676138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMRPIVATST AIPKPSMQES CVVMEPGEPY AHSVRQIPYQ RRPFCPANRE RDLLNQDLEM  60
FWAHHNSTGL YDKLDLPLAR IRKVMKSDPQ VKMVSSDSNV LLGKASEIFI QEVTLRAWRQ  120
TQSCSRNTIR SCDIYKALKS SVIYDELTDL ASFKQCSVNH QQVFPPANVN VPEMKAPIDI  180
DQIQQNKYIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-187615042116HapE
4g92_C3e-187615042116HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9638s0125.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638801.16e-78nuclear transcription factor Y subunit C-10
TrEMBLD7MK462e-89D7MK46_ARALL; Uncharacterized protein
STRINGBostr.9638s0125.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1910667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.13e-41nuclear factor Y, subunit C12