PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.9638s0128.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YC
Protein Properties Length: 111aa    MW: 12966 Da    PI: 6.6609
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.9638s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC66.83.7e-211443881
                NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81
                         +is +aP+l+skace+fileltlr+w+h+++++r+t++++di+ 
  Bostr.9638s0128.1.p  1 KISWDAPALFSKACEYFILELTLRTWMHTQSCTRQTIRRCDIFH 44
                         5999**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.5E-13142IPR009072Histone-fold
SuperFamilySSF471132.29E-9147IPR009072Histone-fold
PfamPF008089.4E-6142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
KISWDAPALF SKACEYFILE LTLRTWMHTQ SCTRQTIRRC DIFHSRPPHC VTHQGVPRPA  60
EIVLPDMNVL VYMNQNKQEN LMDEHFINKG FDLNSDIQVV FFELLFTQPL *
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.9638s0128.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052476e-45AB005247.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXA21.
GenBankAB4937686e-45AB493768.1 Arabidopsis thaliana At5g38140 mRNA for hypothetical protein, partial cds, clone: RAAt5g38140.
GenBankBT0219196e-45BT021919.1 Arabidopsis thaliana At5g38140 mRNA, complete cds.
GenBankBT0257756e-45BT025775.1 Arabidopsis thaliana At5g38140 mRNA, complete cds.
GenBankCP0026886e-45CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874803.15e-44nuclear transcription factor Y subunit C-10
SwissprotQ58CM82e-41NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLD7MK406e-49D7MK40_ARALL; Uncharacterized protein
STRINGBostr.9638s0128.1.p1e-78(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.19e-44nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]