PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01130.2.p
Common NameBRADI_1g01130
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 526aa    MW: 57274.2 Da    PI: 4.5836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.2e-35481382101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+ ++ ++sw   +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Bradi1g01130.2.p  48 FLMKTYEMVDDPGTDAVVSWGPGNNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 131
                       9*********************99*****************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Bradi1g01130.2.p 132 KTINRRK 138
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-3942132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3544137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6144137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3048137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEGGVVAAAA AAAAAAATVT TAVSPPPAPP AAASNGGGGA AAAAPPPFLM KTYEMVDDPG  60
TDAVVSWGPG NNSFIVWNTP EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLRGQKHL LKTINRRKPL HGNNQMQVQQ QQQQQQQPQL QNAPIPACVE VGKFGMEEEI  180
EMLKRDKNVL MQELVRLRQQ QQTTDHQLQT LGKRLQGMEQ RQQQMMSFLA KAMQSPGFLA  240
QFVQQNENSR RRIVAANKKR RLPKQDDGLD SESASLDGQI IKYQPMINEA ATAMLRKILQ  300
QDSSHRYESM GNSDNFLLEN SMPTAQAFDS SSSTRNSAVT LAEVPGNSSI PYMATSSGLS  360
AICSSSTPAE IQHPVLDNIL SKELPNMSSA PSVPTAMAPG PNDIGIPGFP DLHDIITEDV  420
VGIPGGSFEM PGPECIFPLP EDGDDSIPID TDEILSSDDT QKLPAIIDSF WEQFLVTSPL  480
SVDNDEVDSG LLDTREAQLD NGWARTDNLA NLTEQMGLLS SNHRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-273613717129Heat shock factor protein 1
5d5v_B1e-273613717129Heat shock factor protein 1
5d5v_D1e-273613717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01130.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549170.0AK354917.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1013F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559114.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLI1GKP10.0I1GKP1_BRADI; Uncharacterized protein
STRINGBRADI1G01130.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-123heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]